Search

Users can access the well-arranged cancer genetic data of OncoVar by using 'Search' model at Search page or 'Browser by cancer types' model at home page. A variety of types of features were allowed to type in search box.

'Search' model:

Cancer summary:

Mutation search:

Gene search:

Pathway search:

'Browser by cancer types' model:

Batch mutation annotation

If you want to obtain the primary information for thousands of mutations in a file, the analysis function will be a good choice.

The process will be easy if you follow the steps below.

1. Enter your e-mail address
2. Upload your file
3. Submit
4. Result will be sent to your e-mail address once the analysis is completed

Cancer specific pathway enrichment

If you want to test whether your interested genes are enriched in our specific cancer pathways, the analysis function will be a good choice.

The process will be easy if you follow the steps below.

1. Enter your e-mail address
2. Upload your genesymbol list file
3. Submit
4. Result will be sent to your e-mail address once the analysis is completed

Hg19toHg38 conversion

If you want to convert your mutation from hg19 to hg38, you can use this function.

The process will be easy if you follow the steps below.

1. Enter your e-mail address
2. Upload your genesymbol list file
3. Submit
4. Result will be sent to your e-mail address once the analysis is completed

Hg38toHg19 conversion

If you want to convert your mutation from hg38 to hg19, you can use this function.

The process will be easy if you follow the steps below.

1. Enter your e-mail address
2. Upload your genesymbol list file
3. Submit
4. Result will be sent to your e-mail address once the analysis is completed

Stats

All summary and comparison figures across all cancer types in each project can be retrieved from here .

Download

All cancer associated exonic variants from TCGA and ICGC projects can be download from here.